PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g024790.1
Common NameMTR_8g024790
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 465aa    MW: 52211.6 Da    PI: 5.512
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g024790.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.36.7e-14290336354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++h e+Er+RR+++N++f  Lr+++P+       K++Ka+ L  Av+YI++L
  Medtr8g024790.1 290 MNHVEAERQRREKLNHRFYALRSVVPNV-----SKMDKASLLSDAVDYINEL 336
                      5899***********************6.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.7E-4126181IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474592.75E-18287348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.012287336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.18E-14290341No hitNo description
Gene3DG3DSA:4.10.280.102.4E-17291349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-11291336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.0E-17293342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00993406462No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MSPSSSSSII SLPHENENPS PQTLTLQQKL QFLVQTQSEN WVYAILWQTT KDEKGKPLLS  60
WGEGYFQGTK ETTNSNKQND SNTCANKDAE WFYVMSLTRI FSIGNASSIS LPGKSFALDS  120
VLWLNSKHEL QIYNCERSNE AHVHGIETLI CIPTTNGVIE MGSYDNIQQN WNLVHQAKSM  180
FQTSSSESNS EIDLISTNPL DKSMFQTFAD IGIVSGSGED TDETQKTMNQ KLQQMNNIVS  240
SCSIDSENSD SEYCPPLATP TKTRTEKDSF EKREPKKRGR KPLSGTQTPM NHVEAERQRR  300
EKLNHRFYAL RSVVPNVSKM DKASLLSDAV DYINELKSKI EDLESVQQKE SKKVKMETME  360
IVDNNSATTT STVVDQKRPC NVNAFEIDVK IIGNDAMVRV QSENVNHPGA RLMSVLKDLE  420
FQVHHASIST VNEVMVQDVV VRIPNEMNKE ESLIRSAILM KLGQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yz6_A5e-29251818192Transcription factor MYC3
4rs9_A5e-29251818192Transcription factor MYC3
4rqw_B5e-29251818192Transcription factor MYC3
4rqw_A5e-29251818192Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013444575.10.0basic helix loop helix (bHLH) family transcription factor
TrEMBLA0A072TYH10.0A0A072TYH1_MEDTR; Basic helix loop helix (BHLH) family transcription factor
STRINGGLYMA16G02320.21e-162(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.13e-50bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]